| DB name |
Description |
Size |
Av. Freq. Update |
Current Release |
Last Update |
| Bacteria |
"Genomes Bacteria (NCBI)" |
|
12:09:09 |
2010-03-13 |
13-03-2010 10:29:53 |
| Fungi |
"Genomes Fungi (NCBI)" |
|
18:09:53 |
2010-02-25 |
01-03-2010 07:02:29 |
| dbest |
"dbEST (Nature Genetics 4:332-3;1993) is a division of GenBank that contains sequence data and other information on single-pass
cDNA sequences, or Expressed Sequence Tags, from a number of organisms."
|
|
09:16:14 |
2010-01-05 |
05-03-2010 11:36:56 |
| ensembl_aspergillus_nidulans |
"Ensembl Aspergillus nidulans Genomes cDNA - FASTA - BLASTDB" |
|
00:00:00 |
2010-03-04 |
12-03-2010 12:40:09 |
| ensembl_bos_taurus |
"Ensembl Bos Taurus cDNA- FASTA - BLASTDB" |
|
88:06:56 |
2010-03-03 |
07-03-2010 22:01:50 |
| ensembl_bos_taurus_ncrna |
"Ensembl Bos Taurus ncRNA - FASTA - BLASTDB" |
|
78:07:13 |
2010-03-03 |
07-03-2010 22:02:10 |
| ensembl_canis_familiaris |
"Ensembl Canis Familiaris cDNA - FASTA - BLASTDB" |
|
82:02:00 |
2010-03-03 |
07-03-2010 22:00:24 |
| ensembl_ciona_intestinalis |
"Ensembl Ciona Intestinalis cDNA - FASTA - BLASTDB" |
|
82:01:58 |
2010-03-03 |
07-03-2010 22:00:18 |
| ensembl_danio_rerio |
"Ensembl Danio Rerio cDNA - FASTA - BLASTDB" |
|
11:12:07 |
2010-03-03 |
14-03-2010 22:00:32 |
| ensembl_equus_caballus |
"Ensembl Equus caballus cDNA- FASTA - BLASTDB" |
|
39:04:54 |
2010-03-03 |
07-03-2010 22:00:44 |
| ensembl_gallus_gallus |
"Ensembl Gallus Gallus cDNA - FASTA - BLASTDB" |
|
88:06:56 |
2010-03-03 |
07-03-2010 22:00:31 |
| ensembl_gallus_gallus_ncrna |
"Ensembl Gallus Gallus ncRNA - FASTA - BLASTDB" |
|
78:07:14 |
2010-03-03 |
07-03-2010 22:02:21 |
| ensembl_homo_sapiens |
"Ensembl Homo Sapiens cDNA - FASTA - BLASTDB" |
|
70:15:08 |
2010-03-03 |
07-03-2010 22:01:15 |
| ensembl_macaca_mulatta |
"Ensembl Macaca Mulatta cDNA - FASTA - BLASTDB" |
|
82:02:02 |
2010-03-03 |
07-03-2010 22:01:45 |
| ensembl_monodelphis_domestica |
"Ensembl Monodelphis Domestica cDNA - FASTA - BLASTDB" |
|
82:01:58 |
2010-03-03 |
07-03-2010 22:02:11 |
| ensembl_mus_musculus |
"Ensembl Mus Musculus cDNA - FASTA - BLASTDB" |
|
88:06:56 |
2010-03-03 |
07-03-2010 22:02:38 |
| ensembl_oryctolagus_cuniculus |
"Ensembl Oryctolagus Cuniculus cDNA - FASTA - BLASTDB" |
|
88:06:56 |
2010-03-03 |
07-03-2010 22:01:36 |
| ensembl_oryctolagus_cuniculus_ncrna |
"Ensembl Oryctolagus Cuniculus ncRNA - FASTA - BLASTDB" |
|
78:07:11 |
2010-03-03 |
07-03-2010 22:01:21 |
| ensembl_oryzias_latipes |
"Ensembl Oryzias Latipes cDNA - FASTA - BLASTDB" |
|
78:15:59 |
2010-03-03 |
07-03-2010 22:01:14 |
| ensembl_pan_troglodytes |
"Ensembl Pan Troglodytes cDNA - FASTA - BLASTDB" |
|
82:02:02 |
2010-03-03 |
07-03-2010 22:01:22 |
| ensembl_pongo_pygmaeus |
"Ensembl Pongo Pygmaeus cDNA - FASTA - BLASTDB" |
|
82:02:01 |
2010-03-03 |
07-03-2010 22:01:29 |
| ensembl_rattus_norvegicus |
"Ensembl Rattus Norvegicus cDNA - FASTA - BLASTDB" |
|
82:02:02 |
2010-03-03 |
07-03-2010 22:02:05 |
| ensembl_takifugu_rubripes |
"Ensembl Takifugu Rubripes cDNA - FASTA - BLASTDB" |
|
88:06:56 |
2010-03-03 |
07-03-2010 22:01:59 |
| ensembl_tetraodon_nigroviridis |
"Ensembl Tetraodon Nigroviridis cDNA - FASTA - BLASTDB" |
|
88:06:56 |
2010-03-03 |
07-03-2010 22:00:51 |
| ensembl_xenopus_tropicalis |
"Ensembl Xenopus Tropicalis cDNA - FASTA - BLASTDB" |
|
82:01:57 |
2010-03-03 |
07-03-2010 22:02:21 |
| env |
"env_nr : Environmental protein sequences. env_nt : Environmental nucleotide sequences" |
|
08:16:56 |
2010-03-08 |
12-03-2010 11:28:39 |
| enzyme |
"ENZYME : the repository of information relative to the nomenclature of enzymes" |
|
20:10:17 |
02-Mar-2010 |
05-03-2010 19:00:51 |
| est |
"Alias file for preformatted est databases, requires all volumes of est_human, est_mouse, and est_others." |
|
08:06:13 |
2010-03-06 |
09-03-2010 01:31:14 |
| frnadb |
"The Functional RNA Database (fRNAdb)" |
|
13:15:17 |
2010-03-15 |
15-03-2010 06:18:46 |
| geneontology |
"Gene Ontologie" |
|
-498:-19:-30 |
2010-03-06 |
07-03-2010 23:42:36 |
| gss |
"Sequences from the GSS division of GenBank, EMBL and DDBJ" |
|
-166:-6:-27 |
2010-02-26 |
01-03-2010 22:17:26 |
| htgs |
"htgs database with high throughput genomic entries from the htg division of GenBank, EMBL, and DDBJ" |
|
07:23:31 |
2010-03-06 |
08-03-2010 21:07:08 |
| human_genomic |
"human RefSeq (NC_######) chromosome records with gap adjusted concatnated NT_ contigs" |
|
-156:-22:-16 |
2010-02-26 |
01-03-2010 20:12:12 |
| human_genomic_transcript |
"Combined database for human genome and refseq transcripts" |
|
08:06:12 |
2010-03-02 |
08-03-2010 19:52:08 |
| igSeq |
"Human and Mouse immunoglobulin nucleotide or protein sequences" |
|
08:05:04 |
2010-03-12 |
12-03-2010 22:12:20 |
| interpro |
"InterPro is a database of protein families, domains and functional sites in which identifiable features found in known proteins
can be applied to unknown protein sequences."
|
|
28:20:57 |
25.0 |
20-02-2010 00:47:10 |
| mouse_genomic_transcript |
"Combined database for mouse genome and refseq transcripts" |
|
08:11:06 |
2010-03-02 |
09-03-2010 09:26:15 |
| nt |
"nucleotide sequence database, with entries from all traditional divisions of GenBank, EMBL and DDBJ excluding bulk divisions
(gss, sts, pat, est, htg divisions) and wgs entries. Not non-redundant"
|
|
08:00:19 |
2010-03-08 |
11-03-2010 21:04:24 |
| omim |
"OMIM : Online Mendelian Inheritance in Man" |
|
14:20:41 |
2010-03-14 |
14-03-2010 19:01:03 |
| other_genomic |
"RefSeq chromosome records (NC_######) for organisms other than human" |
|
08:00:29 |
2010-03-08 |
12-03-2010 10:29:34 |
| patent |
"Patent protein/nucleotide sequence database" |
|
07:18:21 |
2010-03-10 |
12-03-2010 22:25:26 |
| pdb |
"Protein sequences from pdb protein structures" |
|
07:16:22 |
2010-03-10 |
12-03-2010 22:12:56 |
| prosite |
"PROSITE protein families and domains database" |
|
22:02:28 |
20.61 |
05-03-2010 20:02:23 |
| rebase |
"REBASE : The Restriction Enzyme Database" |
|
16:10:15 |
003 |
02-03-2010 06:32:15 |
| refseq |
"NCBI genomic reference sequences ( Index blast : refseq_genomic, refseq_protein, refseq_rna )" |
|
09:07:14 |
2010-02-12 |
05-03-2010 14:37:11 |
| sts |
"Database for sequence tag site entries" |
|
08:00:19 |
2010-03-08 |
11-03-2010 18:50:31 |
| swissprot |
"Swiss-prot database (last major release)" |
|
07:16:22 |
2010-03-10 |
12-03-2010 22:01:55 |
| taxonomy |
"The taxonomy database of the International Sequence Database Collaboration contains the names of all organisms that are represented
in the sequence databases with at least one nucleotide or protein sequence."
|
|
04:23:22 |
2010-03-12 |
14-03-2010 19:30:33 |
| unigene |
"UniGene: An Organized View of the Transciptome." |
|
15:08:39 |
2010-02-24 |
05-03-2010 03:09:27 |
| uniprot |
"UniProt (Universal Protein Resource) is the world's most comprehensive catalog of information on proteins. It is a central
repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR."
|
|
11:16:59 |
15.15 |
12-03-2010 21:12:20 |
| uniref100 |
"UniProt Reference Clusters 100- UniRef100 contains all records in the UniProt Knowledgebase and selected UniParc records" |
|
22:02:35 |
15.15 |
05-03-2010 23:05:47 |
| uniref50 |
"UniProt Reference Clusters 50 - UniRef50 clusters are generated from the UniRef90 seed sequences with a 50% sequence identity
threshold using the CD-HIT algorithm."
|
|
22:02:30 |
15.15 |
05-03-2010 20:23:01 |
| uniref90 |
"UniProt Reference Clusters 90 - UniRef90 clusters are generated from the UniRef100 seed sequences with a 90% sequence identity
threshold using the CD-HIT algorithm."
|
|
22:07:40 |
15.15 |
12-03-2010 20:15:29 |
| wgs |
"Whole genome shotgun genome assemblies" |
|
07:18:37 |
2010-03-12 |
14-03-2010 14:06:06 |
